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Machine Learning with R Cookbook, Second Edition

You're reading from   Machine Learning with R Cookbook, Second Edition Analyze data and build predictive models

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Product type Paperback
Published in Oct 2017
Publisher Packt
ISBN-13 9781787284395
Length 572 pages
Edition 2nd Edition
Languages
Tools
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Author (1):
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Yu-Wei, Chiu (David Chiu) Yu-Wei, Chiu (David Chiu)
Author Profile Icon Yu-Wei, Chiu (David Chiu)
Yu-Wei, Chiu (David Chiu)
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Table of Contents (21) Chapters Close

Title Page
Credits
About the Authors
About the Reviewers
www.PacktPub.com
Customer Feedback
Preface
1. Practical Machine Learning with R FREE CHAPTER 2. Data Exploration with Air Quality Datasets 3. Analyzing Time Series Data 4. R and Statistics 5. Understanding Regression Analysis 6. Survival Analysis 7. Classification 1 - Tree, Lazy, and Probabilistic 8. Classification 2 - Neural Network and SVM 9. Model Evaluation 10. Ensemble Learning 11. Clustering 12. Association Analysis and Sequence Mining 13. Dimension Reduction 14. Big Data Analysis (R and Hadoop)

Visualizing a generalized additive model


In this recipe, we demonstrate how to add a gam fitted regression line to a scatter plot. In addition, we visualize the gam fit using the plot function.

Getting ready

Complete the previous recipe by assigning a gam fitted model to the fit variable.

How to do it...

Perform the following steps to visualize the generalized additive model:

  1. Generate a scatter plot using the nox and dis variables:
        > plot(nox, dis)  

Scatter plot of variable nox against dis

  1. Add the regression to the scatter plot:
        > x = seq(0, 1, length = 500)
        > y = predict(fit, data.frame(nox = x))
        > lines(x, y, col = "red", lwd = 2) 

Fitted regression of gam on a scatter plot

  1. Alternatively, you can plot the fitted model using the plot function:
        > plot(fit)  

Plot of fitted gam

How it works...

To visualize the fitted regression, we first generate a scatter plot using the dis and nox variables. Then, we generate the sequence of x-axis, and respond y...

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