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Image Processing with ImageJ - Second Edition

You're reading from Image Processing with ImageJ - Second Edition Extract and analyze data from complex images with ImageJ, the world's leading image processing tool

Product type Paperback

Published in Nov 2015

Publisher

ISBN-13 9781785889837

Length 256 pages

Edition 1st Edition

Languages

Java

Tools

ImageJ

Concepts

Image Editing

Authors (2):

Jurjen Broeke

Pascau

View More author details

Table of Contents (17) Chapters

Image Processing with ImageJ Second Edition

Credits

About the Authors

About the Reviewer

www.PacktPub.com

Preface

1. Getting Started with ImageJ FREE CHAPTER

2. Basic Image Processing with ImageJ

3. Advanced Image Processing with ImageJ

4. Image Segmentation and Feature Extraction with ImageJ

5. Basic Measurements with ImageJ

6. Developing Macros in ImageJ

7. Explanation of ImageJ Constructs

8. Anatomy of ImageJ Plugins

9. Creating ImageJ Plugins for Analysis

10. Where to Go from Here?

Index

Chapter 8. Anatomy of ImageJ Plugins

In this chapter, we will examine how a plugin is organized in ImageJ and how it is implemented in the main interface. We will examine both the legacy plugins (ImageJ1.x) and the new format based on SciJava's model (ImageJ2). The following topics will be discussed in this chapter:

The basic anatomy of a plugin in ImageJ1.x and ImageJ2
Types of plugins
Implementing a plugin
Combining macros and plugins
Running and debugging plugins
Examples of available plugins

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Authors (2)

Jurjen Broeke

Jurjen Broeke

Jurjen Broeke has a PhD in neuroscience from Vrije Universiteit (VU) Amsterdam and uses live-cell imaging techniques to study the fundamental processes of neuronal function. As a neuroscientist, he studies the processes involved in neural communication. Besides acquiring images, Jurjen also develops software to analyze dynamics in ImageJ, MATLAB, and R. When not enjoying the outdoors and taking pictures, he develops technical hardware and software solutions in the Department of Functional Genomics at VU.

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Pascau

Pascau

Javier Pascau received his PhD from Polytechnic University in Madrid in 2006 and is currently a visiting professor at Carlos III University, Madrid. He has been a part of Biomedical Imaging and Instrumentation Group, a research laboratory with a multidisciplinary team of engineers, physicists, biologists, and physicians located both in the university as well as Hospital General Universitario Gregorio Maran (biig.uc3m.es). Javier's research and teaching cover areas such as medical image processing, analysis, quantification, and multimodal registration, both in preclinical and clinical environments. He has been involved in the development of small animal PET and CT devices. In the last few years, Javier has led several projects on intraoperative radiation therapy and image-guided surgery. He has authored more than 40 papers published in peer-reviewed journals over the last 15 years.

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